Hoon Cho Lab

Publications

  • #34
  • Generating Synthetic Electronic Health Record (EHR) Data: A Review with Benchmarking
  • Xingran Chen, Zhenke Wu, Xu Shi, Hyunghoon Cho, Bhramar Mukherjee
  • #33
  • Privacy of Single-Cell Gene Expression Data
  • Hyunghoon Cho
  • Patterns
  • 2024
  • Link
  • Invited Preview article
  • #32
  • Learning-Augmented Sketching Offers Improved Performance for Privacy Preserving and Secure GWAS
  • Junyan Xu, Kaiyuan Zhu, Jieling Cai, Can Kockan, Natnatee Dokmai, Hyunghoon Cho, David P. Woodruff, S. Cenk Sahinalp
  • #31
  • TX-Phase: Secure Phasing of Private Genomes in a Trusted Execution Environment
  • Natnatee Dokmai, Kaiyuan Zhu, S. Cenk Sahinalp, Hyunghoon Cho
  • #30
  • Privacy-Enhancing Technologies in Biomedical Data Science
  • Hyunghoon Cho, David Froelicher, Natnatee Dokmai, Anupama Nandi, Shuvom Sadhuka, Matthew M. Hong, Bonnie Berger
  • Annual Review of Biomedical Data Science
  • 2024
  • Link
  • #29
  • Secure Discovery of Genetic Relatives across Large-Scale and Distributed Genomic Datasets
  • Matthew Man-Hou Hong, David Froelicher, Ricky Magner, Victoria Popic*, Bonnie Berger*, Hyunghoon Cho*
  • Genome Research
  • 2024
  • Link
  • Best Student Paper Award at RECOMB 2024
  • #28
  • Reconstruction of Private Genomes Through Reference-Based Genotype Imputation
  • Matthew J. Mosca and Hyunghoon Cho
  • #27
  • Assessing Transcriptomic Re-Identification Risks Using Discriminative Sequence Models
  • Shuvom Sadhuka, Daniel Fridman, Bonnie Berger*, Hyunghoon Cho*
  • Genome Research
  • 2023
  • Link
  • Also appeared in RECOMB 2023
  • #26
  • sfkit: A Web-Based Toolkit for Secure and Federated Genomic Analysis
  • Simon Mendelsohn, David Froelicher, Denis Loginov, David Bernick, Bonnie Berger*, Hyunghoon Cho*
  • Nucleic Acids Research
  • 2023
  • Link
  • #25
  • Scalable and Privacy-Preserving Federated Principal Component Analysis
  • David Froelicher*, Hyunghoon Cho*, Manaswitha Edupalli, Joao Sa Sousa, Jean-Philippe Bossuat, Apostolos Pyrgelis, Juan Troncoso-Pastoriza, Bonnie Berger, Jean-Pierre Hubaux
  • IEEE Symposium on Security and Privacy (S&P)
  • 2023
  • Link
  • #24
  • Sequre: A High-Performance Framework for Secure Multiparty Computation Enables Biomedical Data Sharing
  • Haris Smajlović, Ariya Shajii, Bonnie Berger, Hyunghoon Cho, Ibrahim Numanagić
  • Genome Biology
  • 2023
  • Link
  • Also appeared in IEEE HiCOMB 2022
  • #23
  • Secure and Federated Genome-Wide Association Studies for Biobank-Scale Datasets
  • Hyunghoon Cho, David Froelicher, Jeffrey Chen, Manaswitha Edupalli, Apostolos Pyrgelis, Juan R. Troncoso-Pastoriza, Jean-Pierre Hubaux, Bonnie Berger
  • #22
  • k-SALSA: k-Anonymous Synthetic Averaging of Retinal Images via Local Style Alignment
  • Minkyu Jeon, Hyeonjin Park, Hyunwoo Kim, Michael Morley, Hyunghoon Cho
  • #21
  • Secure and Federated Linear Mixed Model Association Tests
  • Jeffrey Chen, Manaswitha Edupalli, Bonnie Berger*, Hyunghoon Cho*
  • RECOMB Privacy Workshop
  • 2022
  • Link
  • #20
  • Mechanisms for Hiding Sensitive Genotypes with Information-Theoretic Privacy
  • Fangwei Ye, Hyunghoon Cho, Salim El Rouayheb
  • IEEE Transactions on Information Theory
  • 2022
  • Link
  • Also appeared in ISIT 2020
  • #19
  • Truly Privacy-Preserving Federated Analytics for Precision Medicine with Multiparty Homomorphic Encryption
  • David Froelicher, Juan R. Troncoso-Pastoriza, Jean Louis Raisaro, Michel A. Cuendet, Joao Sa Sousa, Hyunghoon Cho, Bonnie Berger, Jacques Fellay, Jean-Pierre Hubaux
  • Nature Communications
  • 2021
  • Link
  • #17
  • Privacy-Preserving Genotype Imputation in a Trusted Execution Environment
  • Natnatee Dokmai, Can Kockan, Kaiyuan Zhu, Xiaofeng Wang, S. Cenk Sahinalp* and Hyunghoon Cho*
  • Cell Systems
  • 2021
  • Link
  • Also appeared in RECOMB 2021
  • #15
  • Contact Tracing Mobile Apps for COVID-19: Privacy Considerations and Related Trade-offs
  • {Hyunghoon Cho, Daphne Ippolito, Yun William Yu}
  • #14
  • Privacy-Preserving Biomedical Database Queries with Optimal Privacy-Utility Trade-offs
  • Hyunghoon Cho*, Sean Simmons*, Ryan Kim, Bonnie Berger
  • Cell Systems
  • 2020
  • Link
  • Also appeared in RECOMB 2020
  • #12
  • Emerging Technologies Towards Enhancing Privacy in Genomic Data Sharing
  • Bonnie Berger*, Hyunghoon Cho*
  • #9
  • Realizing Private and Practical Pharmacological Collaboration
  • Brian Hie*, Hyunghoon Cho*, Bonnie Berger
  • #7
  • Secure Genome-wide Association Analysis Using Multiparty Computation
  • Hyunghoon Cho, David J. Wu, Bonnie Berger
  • Nature Biotechnology
  • 2018
  • Link
  • Featured in Editors' Choice, Science and MIT News